NCSI: Bioimage Analysis Package for Biofilm Development

Status	Completed
Mentor Name	Etienne Gnimpieba Z.
Mentor's XSEDE Affiliation	Startup allocation
Mentor Has Been in XSEDE Community	4-5 years
Project Title	Bioimage Analysis Package for Biofilm Development
Summary	Bio-image data analysis and search engine development to understand the biofilm formation using 3D reconstruction, modeling and printing. Integrate image datasets from multiple sources to understand the 3D structure of biofilm formation.
Job Description	Bioimage data analysis and search engine development. Integrate image datasets from multiple sources.
Computational Resources	Use Python and R script to analyze big image datasets from existing and lab repositories.
Contribution to Community	The project will lead to paper publication in peer review journal.
Position Type	Apprentice
Training Plan	Enrolled in our bioinformatics Class and continue his current research project under my supervision.
Student Prerequisites/Conditions/Qualifications	Tim have been working in my lab since 2018, and is involved in several image data analysis projects. One of his data analysis result is published in a paper for cancer biomarker identification (https://www.mdpi.com/2072-6694/12/3/756).
Duration	Semester
Start Date	01/05/2022
End Date	05/05/2022